AltAnalyze

AltAnalyze Description

AltAnalyze is a cross-platform utility especially designed to use RNASeq data, identify predicted alternative splicing and alternative promoter changes.After the analysis, you are able to view how these changes may affect protein sequence, domain composition, and microRNA targeting. AltAnalyze is compatible with any RNASeq data (exons and/or junctions), several Affymetrix splicing sensitive array types (Gene 1.0, Exon 1.0, junction) as well as many conventional array-types (e.g., Affymetrix, Illumina, Agilent). This software requires no advanced knowledge of bioinformatics programs or scripting. All you will need are your junction/exon read or microarray files along with some simple descriptions of the conditions that you're analyzing. What's New in This Release: [ read full changelog ] · numerous bug fixes (listed in FeaturesToImplement), · multiple new accessory tools added: interactive network analysis and visualization, 3D PCA, identifier translator, alternative exon viewer, Venn Diagram viewer, and file merger, · MarkerFinder algorithm included to unique find marker genes for each condition, · customizable hierarchical clustering visualization options and associated ontology/gene-set/gene correlation/filtering options , · WikiPathways visualization for inputs without gene-values, 6) Batch effects normalization (combat), · support for Agilent Feature Extraction file normalization and analysis, · additional LineageProfiler analysis options, · network visualization and hierarchical clustering of GO-Elite results and · addition of Whole Genome R Vista TF site predictions for GO-Elite. �.You can free download AltAnalyze from Softpedia now.